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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_001086-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | CO-like | ||||||||
Protein Properties | Length: 367aa MW: 40651.4 Da PI: 4.9584 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 27.4 | 6.8e-09 | 59 | 105 | 2 | 42 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + ++C+ +e+ ++ + C+ + lC +C +H+ H +vp+ NNU_001086-RA 59 RVWICEVCERAPAAFTCKADAAALCTTCDADIHSAnplarrHHRVPI 105 5689*****************************66899999877775 PP | |||||||
2 | CCT | 71.5 | 2.1e-24 | 298 | 341 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ NNU_001086-RA 298 REAKVLRYREKRKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 341 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.684 | 17 | 62 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.8E-4 | 17 | 62 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.48E-6 | 20 | 62 | No hit | No description |
PROSITE profile | PS50119 | 10.793 | 58 | 105 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.2E-6 | 59 | 105 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.26E-8 | 61 | 105 | No hit | No description |
SMART | SM00336 | 8.9E-10 | 63 | 105 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.767 | 298 | 340 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.6E-18 | 298 | 340 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MMIKEEGGSG GTGGGGGWAR MCDSCCSAPC AVYCRADSAY LCAGCDARIH DQVVSQHERV 60 WICEVCERAP AAFTCKADAA ALCTTCDADI HSANPLARRH HRVPILPISG CLYGPSGMNP 120 GRPVRPEINI EDEFMTQEAD EEDEDEAASW LLLNPVKNNN QNNSGLLFGG EVDEYLDLVD 180 YNSCTENQYN DHYYQQNQCS VQQKNEGSDS VVPIQCLAVK ENQHNLQLEM DYEASKPGFS 240 YTASLSHSVS FSSIDASVVP DGIMNDISNS HSRPPKGTID LFSSPPLPMP PQFTPMDREA 300 KVLRYREKRK TRKFEKTIRY ASRKAYAETR PRIKGRFAKR TDVEVEVDQM FSTTVLAESG 360 YGIVPSF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010261698.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 2-like | ||||
Refseq | XP_010261708.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 2-like | ||||
Swissprot | Q96502 | 1e-127 | COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2 | ||||
TrEMBL | F2WNM0 | 1e-174 | F2WNM0_AQUFO; CONSTANS-like protein | ||||
STRING | POPTR_0017s14410.1 | 1e-163 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 2e-75 | CONSTANS-like 2 |